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syringafactin D


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  • Norine ID: NOR01078
  • DOI: 10.26097/nor01078
  • Family: syringafactin
  • Synonym(s): syringafactin D;
  • Activity: surfactant
  • Category: lipopeptide
  • Comment: Components of biosurfactant complex produced by some isolates of P. syringae. A bioinformatics analysis of the C/E domains of the synthetase has predicted that Leu2, Leu3, Gln4, Thr6 and Leu8 probably have a D-isomery but it has not yet been evidenced by structural determination.
  • Source: norine
  • Contributor (creation): Berti Ad
  • Entry information:
    • status: curated - change status to non-NRP (Norine validators only)
    • last modification date: 2013-06-18 by Norine Team [CRIStAL (UMR CNRS 9189), ex-LIFL, France, Charles Viollette Institute, ProBioGEM team, Lille, France, University of Lille, France]
    • view all entry history
  • Type: linear
  • Number of monomers: 9
  • Monomeric composition :
    1
    C12:0-OH(3)
    2
    Leu
    3
    Leu
    4
    Gln
    5
    Leu
    6
    Thr
    7
    Val
    8
    Leu
    9
    Leu
  • Graph representation: C12:0-OH(3),Leu,Leu,Gln,Leu,Thr,Val,Leu,Leu @1 @0,2 @1,3 @2,4 @3,5 @4,6 @5,7 @6,8 @7

  • Atomic structure:

    • Peptide's atomic structure image is not available because smiles is not present.

  • Pseudomonas syringae pv. tomato
  • gram: negative
  • taxid: 323 (view NCBI taxonomy browser)

  • Links between organisms producing the syringafactin D: Pseudomonas syringae pv. tomato
  • Identification of a biosynthetic gene cluster and the six associated lipopeptides involved in swarming motility of Pseudomonas syringae pv. tomato DC3000
    Thomas MG, Berti AD, Greve NJ, Christensen QH, Journal of bacteriology , 2007, Sep,189(17):6312-23.
    DOI: 10.1128/JB.00725-07
    pubMed: 17601782


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