Norine

home > NRP > norine

CDA4b


Get HTML       

  • Norine ID: NOR00029
  • DOI: 10.26097/nor00029
  • Family: Calcium dependent antibiotic
  • Synonym(s): CDA4b;
  • Activity: antimicrobial
  • Category: lipopeptide
  • Formula:
  • Comment: CDA shares a similar structure and possibly a related mode of action to other acidic lipopeptide antibiotics, including daptomycin, friulimicins, and amphomycins.
  • Source: norine
  • Contributor (creation): Norine Team [CRIStAL (UMR CNRS 9189), ex-LIFL, France, Charles Viollette Institute, ProBioGEM team, Lille, France, University of Lille, France]
  • Entry information:
  • Type: partial cyclic
  • Number of monomers: 12
  • Smiles: CCCC7OC7(C(=O)NC(CO)C(=O)NC5C(C)OC(=O)C(Cc1c[nH]c2ccccc12)NC(=O)C(NC(=O)C(NC(=O)CNC(=O)C(CC(=O)O)NC(=O)C(NC(=O)C(CC(=O)O)NC(=O)C(CC(=O)O)NC(=O)C(Cc3c[nH]c4ccccc34)NC5(=O))c6ccc(O)cc6)C(O)C(N)=O)C(C)CC(=O)O)

  • Graph inference:



  • Monomeric composition :
    1
    C6:0-Ep(2)
    2
    Ser
    3
    Thr
    4
    D-Trp
    5
    Asp
    6
    Asp
    7
    D-Hpg
    8
    Asp
    9
    Gly
    10
    D-OH-Asn
    11
    3Me-Glu
    12
    Trp
  • Graph representation: C6:0-Ep(2),Ser,Thr,D-Trp,Asp,Asp,D-Hpg,Asp,Gly,D-OH-Asn,3Me-Glu,Trp @1 @0,2 @1,3,11 @2,4 @3,5 @4,6 @5,7 @6,8 @7,9 @8,10 @9,11 @2,10

  • Atomic structure:
  • Chemical structure
    rBAN vizualisation:
  • Streptomyces coelicolor
  • gram: positive
  • taxid: 100226 (view NCBI taxonomy browser)

  • Streptomyces roseosporus
  • gram: positive
  • synonyms: Streptomyces filamentosus,Streptomyces venezuelae subsp. roseospori,Streptomyces roseisporus
  • taxid: 67294 (view NCBI taxonomy browser)

  • Alternaria brassicae
  • gram:
  • synonyms:
  • taxid: 29911 (view NCBI taxonomy browser)

  • Links between organisms producing the CDA4b: Streptomyces coelicolor, Streptomyces roseosporus, Alternaria brassicae
  • Structure, biosynthetic origin, and engineered biosynthesis of calcium-dependent antibiotics from Streptomyces coelicolor
    Hojati Z, Milne C, Harvey B, Gordon L, Borg M, Flett F, Wilkinson B, Sidebottom PJ, Rudd BA, Hayes MA, Smith CP, Micklefield J, Chemistry and biology , 2002, Nov,9(11):1175-87.
    pubMed: 12445768


back Return to annotations search