syringopeptin 25A
- Norine ID: NOR00352
- DOI: 10.26097/nor00352
- Family: syringopeptin
- Synonym(s): syringopeptin 25A;
- Activity: antimicrobial, toxin
- Category: lipopeptide
- Formula: C113H183N27O30
- Monoisotopic mass: 2398.362417651 g/mol
- Source: norine
- Contributor (creation): Norine Team [CRIStAL (UMR CNRS 9189), ex-LIFL, France, Charles Viollette Institute, ProBioGEM team, Lille, France, University of Lille, France, CRIStAL (UMR CNRS 9189), ex-LIFL, France, Charles Viollette Institute, ProBioGEM team, Lille, France, University of Lille, France]
- Entry information:
- status: curated - change status to non-NRP (Norine validators only)
- last modification date: 2018-12-01 by Emma Ricart Altimiras [Swiss Institute of Bioinformatics, SIB]
- view all entry history
- Type: partial cyclic
- Number of monomers: 26
- Smiles: CCCCCCCC(CC(=N/C(=C\C)/C(=O)N1CCC[C@H]1C(=N[C@@H](C(C)C)C(=N[C@@H](C)C(=N[C@@H](C)C(=N[C@@H](C(C)C)C(=N[C@@H](CC(C)C)C(=N[C@@H](C)C(=N[C@@H](C)C(=N/C(=C\C)/C(=N[C@@H](C(C)C)C(=N/C(=C\C)/C(=N[C@@H](C)C(=N[C@@H](C(C)C)C(=N[C@@H](C)C(=N[C@@H](C)C(=N/C(=C\C)/C(=N[C@H]2C(OC(=O)[C@@H](N=C([C@@H](N=C([C@@H](N=C([C@@H](N=C([C@@H](N=C([C@@H](N=C([C@@H](N=C2O)CO)O)C)O)C(C)C)O)C)O)CCN)O)CCN)O)CC3=CC=C(C=C3)O)C)O)O)O)O)O)O)O)O)O)O)O)O)O)O)O)O)O)O
- Graph inference:
- Monomeric composition :
1 C10:0-OH(3) 2 dhAbu 3 D-Pro 4 D-Val 5 Ala 6 D-Ala 7 Val 8 D-Leu 9 D-Ala 10 D-Ala 11 dhAbu 12 D-Val 13 dhAbu 14 D-Ala 15 D-Val 16 D-Ala 17 D-Ala 18 dhAbu 19 D-aThr 20 D-Ser 21 D-Ala 22 Val 23 Ala 24 Dab 25 D-Dab 26 Tyr - Graph representation: C10:0-OH(3),dhAbu,D-Pro,D-Val,Ala,D-Ala,Val,D-Leu,D-Ala,D-Ala,dhAbu,D-Val,dhAbu,D-Ala,D-Val,D-Ala,D-Ala,dhAbu,D-aThr,D-Ser,D-Ala,Val,Ala,Dab,D-Dab,Tyr @1 @0,2 @1,3 @2,4 @3,5 @4,6 @5,7 @6,8 @7,9 @8,10 @9,11 @10,12 @11,13 @12,14 @13,15 @14,16 @15,17 @16,18 @17,19,25 @18,20 @19,21 @20,22 @21,23 @22,24 @23,25 @18,24
- Atomic structure:
- Pseudomonas syringae pv. syringae
- gram: negative
- taxid: 321 (view NCBI taxonomy browser)
- Pseudomonas syringae pv. atrofaciens
- gram: negative
- taxid: 192087 (view NCBI taxonomy browser)
- Links between organisms producing the syringopeptin 25A: Pseudomonas syringae pv. syringae, Pseudomonas syringae pv. atrofaciens
- The phytotoxic lipodepsipeptide syringopeptin 25A from Pseudomonas syringae pv syringae forms ion channels in sugar beet vacuoles
Dalla Serra M, Carpaneto A, Menestrina G, Fogliano V, Gambale F, The Journal of membrane biology , 2002, Aug 1,188(3):237-48.
DOI: 10.1007/s00232-001-0187-x
pubMed: 12181614
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